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Raw Signal Density Graphs of iPS DF 19.11 Cell Line ChIP-Seq Input Data
Illumina ChIP-Seq Input read mappings from the iPS DF 19.11 Cell Line, Library SK446, were processed into density graphs of raw signal representing the aligned read density.


Project News:
2011/11/21:
ANALYSIS XML file 'ucsd.chip-seq.level.2.xml' uploaded



alias: renlab.Input.iPS-19.11.02.01.hg19.level.2.release.5
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSD.iPS_DF_19.11.Input.SK446.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 5
BROWSER_TRACK_NAME: iD19.11 Input 46
BROWSER_TRACK_DESCRIPTION: UCSD iPS DF 19.11 Cell Line ChIP-Seq Input Library SK446 EA Release 5
NUMBER_OF_MAPPED_READS: 6,247,513
NUMBER_OF_Input_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 61
FINDPEAKS_SCORE: 0.02
FINDPEAKS_PERCENTILE: 100
HOTSPOT_SCORE: 0.16
HOTSPOT_PERCENTILE: 100
IROC_SCORE: 0.61
IROC_PERCENTILE: 38
POISSON_SCORE: 0.32
POISSON_PERCENTILE: 100
MAXIMUM_REPLICATE_CORRELATION: 0.65

 

 


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