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Raw Signal Density Graphs of H1 BMP4 Derived Trophoblast Cultured Cells Histone H3K27ac ChIP-Seq Data
Illumina Histone H3K27ac ChIP-Seq read mappings from the H1 BMP4 Derived Trophoblast Cultured Cells, Library SK449, were processed into density graphs of raw signal representing the aligned read density.
Project News:
2011/11/21: ANALYSIS XML file 'ucsd.chip-seq.level.2.xml' uploaded
alias: renlab.H3K27ac.BMP4T.02.01.hg19.level.2.release.5
Analysis Center: EDACC Analysis File Type: .wig Analysis File Name: UCSD.H1_BMP4_Derived_Trophoblast_Cultured_Cells.H3K27ac.SK449.wig DATA_ANALYSIS_LEVEL: 2 EXPERIMENT_TYPE: ChIP-Seq GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19 SOFTWARE: In house programs and scripts SOFTWARE_VERSION: NA READ_EXTENSION: 200bp TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained. GENOMIC_WINDOW: 20bp TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None RELEASE_NUMBER: Human Epigenome Atlas 5 BROWSER_TRACK_NAME: HBDT H3K27ac 49 BROWSER_TRACK_DESCRIPTION: UCSD H1 BMP4 Derived Trophoblast Cultured Cells Histone H3K27ac Library SK449 EA Release 5 NUMBER_OF_MAPPED_READS: 8,739,818 NUMBER_OF_H3K27ac_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 34 FINDPEAKS_SCORE: 0.07 FINDPEAKS_PERCENTILE: 21 HOTSPOT_SCORE: 0.22 HOTSPOT_PERCENTILE: 29 IROC_SCORE: 0.83 IROC_PERCENTILE: 9 POISSON_SCORE: 0.32 POISSON_PERCENTILE: 47 MAXIMUM_REPLICATE_CORRELATION: 0.9 |
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