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Raw Signal Density Graphs of iPS DF 6.9 Cell Line Histone H3K9me3 ChIP-Seq Data
Illumina Histone H3K9me3 ChIP-Seq read mappings from the iPS DF 6.9 Cell Line, Library SK503, were processed into density graphs of raw signal representing the aligned read density.
Project News:
2011/11/21: ANALYSIS XML file 'ucsd.chip-seq.level.2.xml' uploaded
alias: renlab.H3K9me3.iPS-6.9.02.01.hg19.level.2.release.5
Analysis Center: EDACC Analysis File Type: .wig Analysis File Name: UCSD.iPS_DF_6.9.H3K9me3.SK503.wig DATA_ANALYSIS_LEVEL: 2 EXPERIMENT_TYPE: ChIP-Seq GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19 SOFTWARE: In house programs and scripts SOFTWARE_VERSION: NA READ_EXTENSION: 200bp TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained. GENOMIC_WINDOW: 20bp TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None RELEASE_NUMBER: Human Epigenome Atlas 5 BROWSER_TRACK_NAME: iD6.9 H3K9me3 03 BROWSER_TRACK_DESCRIPTION: UCSD iPS DF 6.9 Cell Line Histone H3K9me3 Library SK503 EA Release 5 NUMBER_OF_MAPPED_READS: 66,582,755 NUMBER_OF_H3K9me3_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 49 FINDPEAKS_SCORE: 0.01 FINDPEAKS_PERCENTILE: 2 HOTSPOT_SCORE: 0.03 HOTSPOT_PERCENTILE: 2 IROC_SCORE: 0.0 IROC_PERCENTILE: 4 POISSON_SCORE: 0.17 POISSON_PERCENTILE: 24 MAXIMUM_REPLICATE_CORRELATION: 0.82 |
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