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Raw Signal Density Graphs of H1 Derived Mesenchymal Stem Cells ChIP-Seq Input Data
Illumina ChIP-Seq Input read mappings from the H1 Derived Mesenchymal Stem Cells, Library SK443, were processed into density graphs of raw signal representing the aligned read density.
Project News:
2011/11/21: ANALYSIS XML file 'ucsd.chip-seq.level.2.xml' uploaded
alias: renlab.Input.MSC.01.01.hg19.level.2.release.5
Analysis Center: EDACC Analysis File Type: .wig Analysis File Name: UCSD.H1_Derived_Mesenchymal_Stem_Cells.Input.SK443.wig DATA_ANALYSIS_LEVEL: 2 EXPERIMENT_TYPE: ChIP-Seq GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19 SOFTWARE: In house programs and scripts SOFTWARE_VERSION: NA READ_EXTENSION: 200bp TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained. GENOMIC_WINDOW: 20bp TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None RELEASE_NUMBER: Human Epigenome Atlas 5 BROWSER_TRACK_NAME: HDMSC Input 43 BROWSER_TRACK_DESCRIPTION: UCSD H1 Derived Mesenchymal Stem Cells ChIP-Seq Input Library SK443 EA Release 5 NUMBER_OF_MAPPED_READS: 21,308,140 NUMBER_OF_Input_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 61 FINDPEAKS_SCORE: 0.01 FINDPEAKS_PERCENTILE: 97 HOTSPOT_SCORE: 0.05 HOTSPOT_PERCENTILE: 80 IROC_SCORE: 0.97 IROC_PERCENTILE: 53 POISSON_SCORE: 0.1 POISSON_PERCENTILE: 90 MAXIMUM_REPLICATE_CORRELATION: 0.96 |
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