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Raw Signal Density Graphs of H1 Derived Mesenchymal Stem Cells ChIP-Seq Input Data
Illumina ChIP-Seq Input read mappings from the H1 Derived Mesenchymal Stem Cells, Library SK443, were processed into density graphs of raw signal representing the aligned read density.


Project News:
2011/11/21:
ANALYSIS XML file 'ucsd.chip-seq.level.2.xml' uploaded



alias: renlab.Input.MSC.01.01.hg19.level.2.release.5
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSD.H1_Derived_Mesenchymal_Stem_Cells.Input.SK443.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 5
BROWSER_TRACK_NAME: HDMSC Input 43
BROWSER_TRACK_DESCRIPTION: UCSD H1 Derived Mesenchymal Stem Cells ChIP-Seq Input Library SK443 EA Release 5
NUMBER_OF_MAPPED_READS: 21,308,140
NUMBER_OF_Input_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 61
FINDPEAKS_SCORE: 0.01
FINDPEAKS_PERCENTILE: 97
HOTSPOT_SCORE: 0.05
HOTSPOT_PERCENTILE: 80
IROC_SCORE: 0.97
IROC_PERCENTILE: 53
POISSON_SCORE: 0.1
POISSON_PERCENTILE: 90
MAXIMUM_REPLICATE_CORRELATION: 0.96

 

 


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