|
|||||||||
Mapping of H1 Derived Mesenchymal Stem Cells Histone H3K27ac ChIP-Seq Data
Illumina reads produced by Histone H3K27ac ChIP-Seq on H1 Derived Mesenchymal Stem Cells, Library SK436, were mapped to the human genome using Pash.
Project News:
2011/11/21: ANALYSIS XML file 'ucsd.chip-seq.level.1.xml' uploaded
alias: renlab.H3K27ac.MSC.01.01.hg19.level.1.release.5
Analysis Center: EDACC Analysis File Type: .bed Analysis File Name: UCSD.H1_Derived_Mesenchymal_Stem_Cells.H3K27ac.SK436.bed DATA_ANALYSIS_LEVEL: 1 EXPERIMENT_TYPE: ChIP-Seq GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19 SOFTWARE: Pash SOFTWARE_VERSION: 3.0 MAXIMUM_ALIGNMENT_LENGTH: Read length MISMATCHES_ALLOWED: 10% of read length ALIGNMENTS_ALLOWED: 1 TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 1 position it is removed from consideration. TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained. ALIGNMENT_POSTPROCESSING: None READ_EXTENSION: 200bp RELEASE_NUMBER: Human Epigenome Atlas 5 NUMBER_OF_MAPPED_READS: 58,162,586 NUMBER_OF_H3K27ac_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 34 FINDPEAKS_SCORE: 0.2 FINDPEAKS_PERCENTILE: 56 HOTSPOT_SCORE: 0.23 HOTSPOT_PERCENTILE: 35 IROC_SCORE: 1.0 IROC_PERCENTILE: 100 POISSON_SCORE: 0.28 POISSON_PERCENTILE: 32 MAXIMUM_REPLICATE_CORRELATION: 0.99 |
|||||||||
|
|||||||||