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Mapping of H1 BMP4 Derived Mesendoderm Cultured Cells Histone H3K4me3 ChIP-Seq Data
Illumina reads produced by Histone H3K4me3 ChIP-Seq on H1 BMP4 Derived Mesendoderm Cultured Cells, Library AK135, were mapped to the human genome using Pash.
Project News:
2011/11/21:
ANALYSIS XML file 'ucsd.chip-seq.level.1.xml' uploaded
alias: renlab.H3K4me3.BMP4M.01.01-renlab.H3K4me3.BMP4M.01.01.hg19.level.1.release.5
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: UCSD.H1_BMP4_Derived_Mesendoderm_Cultured_Cells.H3K4me3.AK135.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 1
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 1 position it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
ALIGNMENT_POSTPROCESSING: None
READ_EXTENSION: 200bp
RELEASE_NUMBER: Human Epigenome Atlas 5
NUMBER_OF_MAPPED_READS: 109,756,949
NUMBER_OF_H3K4me3_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 54
FINDPEAKS_SCORE: 0.08
FINDPEAKS_PERCENTILE: 11
HOTSPOT_SCORE: 0.09
HOTSPOT_PERCENTILE: 2
IROC_SCORE: 1.0
IROC_PERCENTILE: 100
POISSON_SCORE: 0.12
POISSON_PERCENTILE: 2
MAXIMUM_REPLICATE_CORRELATION: 0.63
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: UCSD.H1_BMP4_Derived_Mesendoderm_Cultured_Cells.H3K4me3.AK135.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 1
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 1 position it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
ALIGNMENT_POSTPROCESSING: None
READ_EXTENSION: 200bp
RELEASE_NUMBER: Human Epigenome Atlas 5
NUMBER_OF_MAPPED_READS: 109,756,949
NUMBER_OF_H3K4me3_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 54
FINDPEAKS_SCORE: 0.08
FINDPEAKS_PERCENTILE: 11
HOTSPOT_SCORE: 0.09
HOTSPOT_PERCENTILE: 2
IROC_SCORE: 1.0
IROC_PERCENTILE: 100
POISSON_SCORE: 0.12
POISSON_PERCENTILE: 2
MAXIMUM_REPLICATE_CORRELATION: 0.63
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