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Raw Signal Density Graphs of Brain Germinal Matrix ChIP-Seq Input Data
Illumina ChIP-Seq Input read mappings from Brain Germinal Matrix, Donor HuFGM02 were processed into density graphs of raw signal representing the aligned read density.
Project News:
2011/11/10: ANALYSIS XML file 'ucsf-ubc.chip-seq.level.2.xml' uploaded
alias: A03507-1.hg19.level.2.release.5
Analysis Center: EDACC Analysis File Type: .wig Analysis File Name: UCSF-UBC.Brain_Germinal_Matrix.Input.HuFGM02.wig DATA_ANALYSIS_LEVEL: 2 EXPERIMENT_TYPE: ChIP-Seq GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19 SOFTWARE: In house programs and scripts SOFTWARE_VERSION: NA READ_EXTENSION: 200bp TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained. GENOMIC_WINDOW: 20bp TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None RELEASE_NUMBER: Human Epigenome Atlas 5 BROWSER_TRACK_NAME: BGM Input 02 07 BROWSER_TRACK_DESCRIPTION: UCSF-UBC-USC Brain Germinal Matrix ChIP-Seq Input Donor HuFGM02 Library A03507 EA Release 5 NUMBER_OF_MAPPED_READS: 14,595,168 NUMBER_OF_Input_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 61 FINDPEAKS_SCORE: 0.0024 FINDPEAKS_PERCENTILE: 13 HOTSPOT_SCORE: 0.0728 HOTSPOT_PERCENTILE: 90 IROC_SCORE: 0.0 IROC_PERCENTILE: 33 POISSON_SCORE: 0.0948 POISSON_PERCENTILE: 89 MAXIMUM_REPLICATE_CORRELATION: NA |
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