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Raw Signal Density Graphs of Brain Germinal Matrix Histone H3K4me3 ChIP-Seq Data
Illumina Histone H3K4me3 ChIP-Seq read mappings from Brain Germinal Matrix, Donor HuFGM02 were processed into density graphs of raw signal representing the aligned read density.
Project News:
2011/11/10:
ANALYSIS XML file 'ucsf-ubc.chip-seq.level.2.xml' uploaded
alias: A03502-1.hg19.level.2.release.5
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSF-UBC.Brain_Germinal_Matrix.H3K4me3.HuFGM02.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 5
BROWSER_TRACK_NAME: BGM H3K4me3 02 02
BROWSER_TRACK_DESCRIPTION: UCSF-UBC-USC Brain Germinal Matrix Histone H3K4me3 Donor HuFGM02 Library A03502 EA Release 5
NUMBER_OF_MAPPED_READS: 21,260,048
NUMBER_OF_H3K4me3_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 54
FINDPEAKS_SCORE: 0.5816
FINDPEAKS_PERCENTILE: 94
HOTSPOT_SCORE: 0.5831
HOTSPOT_PERCENTILE: 94
IROC_SCORE: 0.9997
IROC_PERCENTILE: 76
POISSON_SCORE: 0.5857
POISSON_PERCENTILE: 94
MAXIMUM_REPLICATE_CORRELATION: 0.99
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSF-UBC.Brain_Germinal_Matrix.H3K4me3.HuFGM02.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 5
BROWSER_TRACK_NAME: BGM H3K4me3 02 02
BROWSER_TRACK_DESCRIPTION: UCSF-UBC-USC Brain Germinal Matrix Histone H3K4me3 Donor HuFGM02 Library A03502 EA Release 5
NUMBER_OF_MAPPED_READS: 21,260,048
NUMBER_OF_H3K4me3_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 54
FINDPEAKS_SCORE: 0.5816
FINDPEAKS_PERCENTILE: 94
HOTSPOT_SCORE: 0.5831
HOTSPOT_PERCENTILE: 94
IROC_SCORE: 0.9997
IROC_PERCENTILE: 76
POISSON_SCORE: 0.5857
POISSON_PERCENTILE: 94
MAXIMUM_REPLICATE_CORRELATION: 0.99
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