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Raw Signal Density Graphs of Brain Germinal Matrix Histone H3K4me1 ChIP-Seq Data
Illumina Histone H3K4me1 ChIP-Seq read mappings from Brain Germinal Matrix, Donor HuFGM02 were processed into density graphs of raw signal representing the aligned read density.
Project News:
2011/11/10:
ANALYSIS XML file 'ucsf-ubc.chip-seq.level.2.xml' uploaded
alias: A03501-1.hg19.level.2.release.5
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSF-UBC.Brain_Germinal_Matrix.H3K4me1.HuFGM02.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 5
BROWSER_TRACK_NAME: BGM H3K4me1 02 01
BROWSER_TRACK_DESCRIPTION: UCSF-UBC-USC Brain Germinal Matrix Histone H3K4me1 Donor HuFGM02 Library A03501 EA Release 5
NUMBER_OF_MAPPED_READS: 25,455,611
NUMBER_OF_H3K4me1_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 54
FINDPEAKS_SCORE: 0.0942
FINDPEAKS_PERCENTILE: 17
HOTSPOT_SCORE: 0.2172
HOTSPOT_PERCENTILE: 17
IROC_SCORE: 0.9133
IROC_PERCENTILE: 20
POISSON_SCORE: 0.3705
POISSON_PERCENTILE: 17
MAXIMUM_REPLICATE_CORRELATION: NA
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSF-UBC.Brain_Germinal_Matrix.H3K4me1.HuFGM02.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 5
BROWSER_TRACK_NAME: BGM H3K4me1 02 01
BROWSER_TRACK_DESCRIPTION: UCSF-UBC-USC Brain Germinal Matrix Histone H3K4me1 Donor HuFGM02 Library A03501 EA Release 5
NUMBER_OF_MAPPED_READS: 25,455,611
NUMBER_OF_H3K4me1_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 54
FINDPEAKS_SCORE: 0.0942
FINDPEAKS_PERCENTILE: 17
HOTSPOT_SCORE: 0.2172
HOTSPOT_PERCENTILE: 17
IROC_SCORE: 0.9133
IROC_PERCENTILE: 20
POISSON_SCORE: 0.3705
POISSON_PERCENTILE: 17
MAXIMUM_REPLICATE_CORRELATION: NA
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