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Mapping of Brain Germinal Matrix Histone H3K4me3 ChIP-Seq Data
Illumina reads produced by Histone H3K4me3 ChIP-Seq on Brain Germinal Matrix, Donor HuFGM02 were mapped to the human genome using Pash.
Project News:
2011/11/10:
ANALYSIS XML file 'ucsf-ubc.chip-seq.level.1.xml' uploaded
alias: A03502-1.hg19.level.1.release.5
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: UCSF-UBC.Brain_Germinal_Matrix.H3K4me3.HuFGM02.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 1
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 1 position it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
ALIGNMENT_POSTPROCESSING: None
READ_EXTENSION: 200bp
RELEASE_NUMBER: Human Epigenome Atlas 5
NUMBER_OF_MAPPED_READS: 21,260,048
NUMBER_OF_H3K4me3_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 54
FINDPEAKS_SCORE: 0.5816
FINDPEAKS_PERCENTILE: 94
HOTSPOT_SCORE: 0.5831
HOTSPOT_PERCENTILE: 94
IROC_SCORE: 0.9997
IROC_PERCENTILE: 76
POISSON_SCORE: 0.5857
POISSON_PERCENTILE: 94
MAXIMUM_REPLICATE_CORRELATION: 0.99
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: UCSF-UBC.Brain_Germinal_Matrix.H3K4me3.HuFGM02.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 1
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 1 position it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
ALIGNMENT_POSTPROCESSING: None
READ_EXTENSION: 200bp
RELEASE_NUMBER: Human Epigenome Atlas 5
NUMBER_OF_MAPPED_READS: 21,260,048
NUMBER_OF_H3K4me3_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 54
FINDPEAKS_SCORE: 0.5816
FINDPEAKS_PERCENTILE: 94
HOTSPOT_SCORE: 0.5831
HOTSPOT_PERCENTILE: 94
IROC_SCORE: 0.9997
IROC_PERCENTILE: 76
POISSON_SCORE: 0.5857
POISSON_PERCENTILE: 94
MAXIMUM_REPLICATE_CORRELATION: 0.99
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