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Mapping of Fetal Stomach Chromatin Accessibility Data
Illumina reads produced by DNAse-Seq on Fetal Stomach, Donor H-24005, Library DS17963 were mapped to the human genome using Pash.
Project News:
2011/11/7:
ANALYSIS XML file 'uw.chromatin.accessibility.level.1.release5.xml' uploaded
alias: DS17963.hg19.level.1.release.5
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: UW.Fetal_Stomach.ChromatinAccessibility.H-24005.DS17963.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: Chromatin Accessibility
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 1
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 1 position it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: None
ALIGNMENT_POSTPROCESSING: None
RELEASE_NUMBER: Human Epigenome Atlas 5
NUMBER_OF_MAPPED_READS: 28,657,032
NUMBER_OF_CHROMATIN_ACCESSIBILITY_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 47
FINDPEAKS_SCORE: 0.3493
FINDPEAKS_PERCENTILE: 28
HOTSPOT_SCORE: 0.3471
HOTSPOT_PERCENTILE: 26
IROC_SCORE: 0.9903
IROC_PERCENTILE: 17
POISSON_SCORE: 0.4353
POISSON_PERCENTILE: 32
MAXIMUM_REPLICATE_CORRELATION: 0.93
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: UW.Fetal_Stomach.ChromatinAccessibility.H-24005.DS17963.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: Chromatin Accessibility
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 1
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 1 position it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: None
ALIGNMENT_POSTPROCESSING: None
RELEASE_NUMBER: Human Epigenome Atlas 5
NUMBER_OF_MAPPED_READS: 28,657,032
NUMBER_OF_CHROMATIN_ACCESSIBILITY_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 47
FINDPEAKS_SCORE: 0.3493
FINDPEAKS_PERCENTILE: 28
HOTSPOT_SCORE: 0.3471
HOTSPOT_PERCENTILE: 26
IROC_SCORE: 0.9903
IROC_PERCENTILE: 17
POISSON_SCORE: 0.4353
POISSON_PERCENTILE: 32
MAXIMUM_REPLICATE_CORRELATION: 0.93
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