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Mapping of Fetal Muscle Upper Trunk Chromatin Accessibility Data
Illumina reads produced by DNAse-Seq on Fetal Muscle Upper Trunk, Donor H-23887, Library DS17664 were mapped to the human genome using Pash.
Project News:
2011/11/7:
ANALYSIS XML file 'uw.chromatin.accessibility.level.1.release5.xml' uploaded
alias: DS17664.hg19.level.1.release.5
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: UW.Fetal_Muscle_Upper_Trunk.ChromatinAccessibility.H-23887.DS17664.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: Chromatin Accessibility
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 1
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 1 position it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: None
ALIGNMENT_POSTPROCESSING: None
RELEASE_NUMBER: Human Epigenome Atlas 5
NUMBER_OF_MAPPED_READS: 44,623,752
NUMBER_OF_CHROMATIN_ACCESSIBILITY_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 47
FINDPEAKS_SCORE: 0.49
FINDPEAKS_PERCENTILE: 72
HOTSPOT_SCORE: 0.4746
HOTSPOT_PERCENTILE: 66
IROC_SCORE: 0.993
IROC_PERCENTILE: 43
POISSON_SCORE: 0.5312
POISSON_PERCENTILE: 66
MAXIMUM_REPLICATE_CORRELATION: NA
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: UW.Fetal_Muscle_Upper_Trunk.ChromatinAccessibility.H-23887.DS17664.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: Chromatin Accessibility
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 1
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 1 position it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: None
ALIGNMENT_POSTPROCESSING: None
RELEASE_NUMBER: Human Epigenome Atlas 5
NUMBER_OF_MAPPED_READS: 44,623,752
NUMBER_OF_CHROMATIN_ACCESSIBILITY_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 47
FINDPEAKS_SCORE: 0.49
FINDPEAKS_PERCENTILE: 72
HOTSPOT_SCORE: 0.4746
HOTSPOT_PERCENTILE: 66
IROC_SCORE: 0.993
IROC_PERCENTILE: 43
POISSON_SCORE: 0.5312
POISSON_PERCENTILE: 66
MAXIMUM_REPLICATE_CORRELATION: NA
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