Genboree BCM
Help Genboree Home
(This is a recently added feature. Report issues to Genboree Admin.)
ChIP-Seq analysis ofH3K4me1 in human H1 cells
Human Chromatin IP REMC Sequencing on Illumina


Project News:
2009/6/22:
EXPERIMENT XML file 'BI.experiment.314G6AAXX.7.H1.H3K4me1.xml' uploaded



alias: 314G6AAXX090406-7-S
expected_number_runs: 1
expected_number_spots: 10000000
expected_number_reads: 10000000
center_name: BI

STUDY_REF: G1828
SAMPLE_DESCRIPTOR: 31731.0

LIBRARY
LIBRARY_NAME: Solexa-10529
LIBRARY_STRATEGY: ChIP-Seq
LIBRARY_SOURCE: GENOMIC
LIBRARY_SELECTION: ChIP
LIBRARY_LAYOUT: SINGLE
LIBRARY_CONSTRUCTION_PROTOCOL: Single read - Illumina

SPOT
SPOT_DECODE_METHOD: 1

PLATFORM
ILLUMINA
INSTRUMENT_MODEL: Illumina Genome Analyzer II
CYCLE_SEQUENCE:
CYCLE_COUNT: 51

BASE CALLS
SEQUENCE_SPACE: Base Space
BASE_CALLER: Solexa primary analysis

QUALITY SCORES
Quality Type: other
QUALITY_SCORER: Solexa primary analysis
NUMBER_OF_LEVELS: 80
MULTIPLIER: 1.0

ATTRIBUTES
EXPERIMENT_TYPE: Histone H3K4me1
EXTRACTION_PROTOCOL: SDS lysis
EXTRACTION_PROTOCOL_TYPE_OF_SONICATOR: Bioruptor
EXTRACTION_PROTOCOL_SONICATION_CYCLES: 1
CHIP_PROTOCOL: standard
CHIP_PROTOCOL_CHROMATIN_AMOUNT: standard
CHIP_PROTOCOL_BEAD_TYPE: standard
CHIP_PROTOCOL_BEAD_AMOUNT: standard
CHIP_PROTOCOL_ANTIBODY_AMOUNT: standard
CHIP_ANTIBODY: H3K4Me1
CHIP_ANTIBODY_PROVIDER: Abcam
CHIP_ANTIBODY_CATALOG: ab8895
CHIP_ANTIBODY_LOT: 383111

 

 


Bioinformatics Research Laboratory © 2001-2024 Baylor College of Medicine
Bioinformatics Research Laboratory
(400D Jewish Wing, MS:BCM225, 1 Baylor Plaza, Houston, TX 77030)