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BI Human Reference Epigenome Mapping Project
Human Chromatin IP REMC Sequencing on Illumina


Project News:
2009/6/10:
EXPERIMENT XML file 'BI.experiment.30CMAAAXX.2.H1.H3K27me3.xml' uploaded



alias: 30CMAAAXX081006-2-S
expected_number_runs: 1
expected_number_spots: 10000000
expected_number_reads: 10000000
center_name: BI

STUDY_REF: G1828
SAMPLE_DESCRIPTOR: 27277.0

LIBRARY
LIBRARY_NAME: Solexa-8039
LIBRARY_STRATEGY: ChIP-Seq
LIBRARY_SOURCE: GENOMIC
LIBRARY_SELECTION: ChIP
LIBRARY_LAYOUT: SINGLE
LIBRARY_CONSTRUCTION_PROTOCOL: Single read - Illumina

SPOT
SPOT_DECODE_METHOD: 1

PLATFORM
ILLUMINA
INSTRUMENT_MODEL: Illumina Genome Analyzer II
CYCLE_SEQUENCE:
CYCLE_COUNT: 50

BASE CALLS
SEQUENCE_SPACE: Base Space
BASE_CALLER: Solexa primary analysis

QUALITY SCORES
Quality Type: other
QUALITY_SCORER: Solexa primary analysis
NUMBER_OF_LEVELS: 80
MULTIPLIER: 1.0

ATTRIBUTES
EXPERIMENT_TYPE: Histone H3K27me3
EXTRACTION_PROTOCOL: SDS lysis
EXTRACTION_PROTOCOL_TYPE_OF_SONICATOR: Bioruptor
EXTRACTION_PROTOCOL_SONICATION_CYCLES: 1
CHIP_PROTOCOL: standard
CHIP_PROTOCOL_CHROMATIN_AMOUNT: standard
CHIP_PROTOCOL_BEAD_TYPE: standard
CHIP_PROTOCOL_BEAD_AMOUNT: standard
CHIP_PROTOCOL_ANTIBODY_AMOUNT: standard
CHIP_ANTIBODY: H3K27Me3
CHIP_ANTIBODY_PROVIDER: Upstate
CHIP_ANTIBODY_CATALOG: 07-449
CHIP_ANTIBODY_LOT: DAM1387952

 

 


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