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Affymetrix HG-U133 arrays of NIH Epigenomics Roadmap Cell Types
CD3+ cells were isolated from umbilical cord blood by flow cytometry; total RNA was isolated and subject to Affymetrix profiling.
Project News:
2011/3/30:
EXPERIMENT XML file 'BI.expressionArray.experiment.xml' uploaded
alias: GBM_hsKM_REMC
center_name: BI
STUDY_REF: G1828
SAMPLE_DESCRIPTOR: 29
ATTRIBUTES
EXPERIMENT_TYPE: Expression Array
PLATFORM: Affymetrix HG-U133_Plus_2
GROWTH_PROTOCOL: Uncultured primary cells
TREATMENT_PROTOCOL: Untreated primary cells
EXTRACT_PROTOCOL: Cells were lysed and RNA extracted using Qiagen Rneasy kit
LABEL_PROTOCOL: As recommended by Affymetrix
HYB_PROTOCOL: As recommended by Affymetrix
SCAN_PROTOCOL: As recommended by Affymetrix
DATA_PROCESSING: Data were processed using Affymetrix GeneChIP Command Console, algorithm version 1.0.0.1029
PROBE_GROUP_FILE: not applicable to 3' array platform
META-PROBESET_FILE: not applicable to 3' array platform
VALUE_DEFINITION: signal calculated by GeneChIP Command Console software
center_name: BI
STUDY_REF: G1828
SAMPLE_DESCRIPTOR: 29
ATTRIBUTES
EXPERIMENT_TYPE: Expression Array
PLATFORM: Affymetrix HG-U133_Plus_2
GROWTH_PROTOCOL: Uncultured primary cells
TREATMENT_PROTOCOL: Untreated primary cells
EXTRACT_PROTOCOL: Cells were lysed and RNA extracted using Qiagen Rneasy kit
LABEL_PROTOCOL: As recommended by Affymetrix
HYB_PROTOCOL: As recommended by Affymetrix
SCAN_PROTOCOL: As recommended by Affymetrix
DATA_PROCESSING: Data were processed using Affymetrix GeneChIP Command Console, algorithm version 1.0.0.1029
PROBE_GROUP_FILE: not applicable to 3' array platform
META-PROBESET_FILE: not applicable to 3' array platform
VALUE_DEFINITION: signal calculated by GeneChIP Command Console software
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