Breakpoint
% Alu
% MIR
% LINE
% LTR
% DNA
% Simple
Repeats
% Low
Complexity
% Total
Repeats
% GC
Rhesus 5'
20.80
5.36
9.19
14.12
3.01
1.20
1.49
55.16
48.90
Rhesus 3'
2.95
4.44
24.02
8.48
2.60
3.87
0.30
46.65
35.31
Human 5'
17.91
5.32
8.27
14.30
1.82
0.48
2.24
50.33
47.19
Human 3'
3.06
4.65
21.22
8.96
7.85
1.28
0.00
47.01
36.57
Average Human
10.60
2.20
20.42
8.29
2.84
41.00
Supplemental Table 5. Repeat and GC composition as percentages of 10 kbp windows spanning the Rhesus breakpoints and the orthologous human sequence.
Average human composition comes from International Human Genome Sequencing Consortium, 2001.