RFAMH.F.-FLJ/H-InV

RNA classes	Total Number	Methods*	Number
snRNA	83	H.F.	72
snRNA	83	RFAM	80
Y RNA	46	H.F.	35
Y RNA	46	45
SnoRNA (C/D box)	21	H.F.	6
		RFAM	4
		snoScan	17
SnoRNA (HA/CA box)	22	H.F.	12
		Fisher	8
		C.M	8
tRNA	13	H.F.	10
tRNA	13	tRNA Scan	9
SRP RNA	17	H.F.	1
SRP RNA	17	SRP RNA Scan	16
miRNA	3	H.F.	1
miRNA	3	RFAM	3
mRNAlike ncRNA	481	H.F.-FANTOM	1
		452
		Unigene Filter	28
rRNA	10	H.F.	3
rRNA	10	RFAM	7
telomerase RNA	1	H.F.	3
7SK RNA	3	H.F.	3
snmRNA	2	H.F.	2
scaRNA	1	H.F.	1
Total	713	872 (Redundant)

Supplementary Table 2. Predicted ncRNA candidates on human chromosome 3.

*H.F: Homologues finding with BLAST or sim4 algorithms
U.S.: Human Unigene Screening method